Application of NetDecoder to different diseases

Disease	GEO ID	Platform name	Platform GEO	PMID
Breast cancer	GSE42568	HG-U133_Plus_2	GPL570	23740839
Dyslipidemia	GSE6054	HG-U133_Plus_2	GPL570	19040724
Alzheimers disease	GSE28146	HG-U133_Plus_2	GPL570	21756998

Processed data for Breast cancer, Alzheimer's disease and Dyslipidemia

Here we provide processed data for Alzheimer's disease and dyslipidemia. This includes normalized microarray gene expression data, sample annotation tables, edge-weighted interactomes and gene signatures. You can use the edge-weighted interactomes as well as the gene signatures in our web interface to reproduce our analysis results from the paper.

Breast cancer

You can download processed data for Breast cancer HERE. This dataset contains gene expression data for control, ER-negative and ER-positive breast cancers. This file is the same as the one provided in our tutorial web page.

Alzheimer's disease

You can download processed data for Alzheimer's disease HERE. This dataset contains gene expression data for control and different states of the Alzheimer's disease progression such as incipient, moderate and severe.

Dyslipidemia

You can download processed data for Dyslipidemia HERE. This dataset contains gene expression data for control, homozygot and heterozygot dyslipidemias.